Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015899995.1_cds_XP_016450030.1_44520
CDS Infomation

[gene=LOC107774889] [db_xref=GeneID:107774889] [protein=root phototropism protein 3-like isoform X1] [protein_id=XP_016450030.1] [location=complement(join(1148..1693,2072..3367,3485..3554,3704..3816))] [gbkey=CDS]
Sequence

ATGTGGGAATCAGAAACTGAGTCTGTTAGTGGAAGAGATTTTGGCAATGGAGTTCTCAGT
GCTAGCGAGCATGGAGTTAAGACTGATAGTTTTGAGCAAAAAGGACAGTCTTGGTATGTA
GCAACTGATATCCCAAGTGACCTTTTAGTTCAAATTGAAGATGTTAGCTTCCATTTACAC
AAGTATCCTTTGCTTTCTAGAAGTGGAAAAATGAACAGAATGATATATGAATCGAGGGGT
GCAGAATTGAGCAAGATAAGTTTAGATGAACTACCAGGTGGACCTGAGGCATTTGAGCTA
GCAGCAAAGTTCTGTTATGGTATTGCTATAGATCTATCTGCAACCAATATTTCTGGCCTA
AGATGTGCAGCTGAGTATCTTGAAATGACTGAGGATTTGGAAGAAGGAAACCTTATATTC
AAGACTGAAGCTTTTCTCAGCTATGTGGTTTTATCTTCATGGAGAGACTCTATATTGGTG
CTAAAGAGCTGTGAAAAGTTATCACCATGGGCAGAAAACCTCCAAATCGTTCGAAGATGC
AGCGAGTCCATCGCGTGGAAAGCTTGTGCTAATCCAAAAGGAATAAAATGGCAGTACACA
GGAAAGCCTACAAAAGTTTCCAGCCCAAATTGGAACCAAATGAAGGATTCCAGCCCAAGT
AGAAACCAGCAAGTAGTACCCCCTGATTGGTGGTTTGAAGATGTTTCAATTCTCAGGATT
GATCACTTTGTGAGAGTGATTACCGCAATCAAGGTAAAGGGCATGAAACACGAACTGATA
GGTGCTGCTATTATGCAGTATGCAGCTAAGTGGCTGCCAGGTTTGATCAAAGAAGGATCA
GGATTGGCGGATGATGGCAGCAACATCAGTAATGGCATAAATGGCACTAGCAGTGGTAGT
TGGAGAGGCGGCCTCCATATGATAGTAGCGGGAATTGGAGATGAAGTACCAAGTGTCCAG
GCCAAAGATCAAAGGATGATTGTTGAAAGCCTAATTAGCATAATACCACAACACAAGGAC
AGTGTTTCGTGTAGCTTCCTTCTTCGACTATTGAGGATGGCAAACATGCTGAAAGTAGCT
CCAGCTTTGATAACAGAACTGGAGAAACGCGTAGGAATGCAGTTTGAGCAGGCTACATTG
GCTGATCTTCTCATACCATCTTATAATAAAAGTGAAACCATGTATGACATCGATCTTGTG
CAGAGGCTTTTGGAACATTTCATAGTTCAAGAGCAGACAGAAAGTTCAAGTCCTAGTAGC
TATCCATTCTCCGATAAACATATGCACGATGGAATTCAAAGGGGTACACATCTAAATGCC
AAGATGAGAGTGGCGAGGCTCGTAGATAGTTACCTAACAGAAGTATCCAGAGACAGAAAT
CTTTCTTTGACAAAATTTCAGGTCTTGGCAGAGGCTTTGCCAGATTCAGCAAGAACATGT
GATGATGGGCTTTATCGAGCAATTGATTCCTATCTTAAGGCCCATCCTACGCTCTCAGAA
CATGAAAGAAAGAGGCTGTGCAGGGTGATGGATTGCCAGAAACTCTCCGTTGATGCTTGC
ATGCACGCTGCTCAGAACGAAAGGCTCCCACTACGAGTGGTGGTGCAAGTACTCTTCTCT
GAGCAGGTGAAGATAAGCAATGCAATGGCCAATCTCTCTCTCAAAGATGCAGGAGAATCG
CATTATCAACCTCTGGTATCTAACCGTAAGTCATTGCTCGAAGCAACGCCACAATCATTT
CAAGAGGGATGGACAGCAGCCAAGAAGGACATCAACACTCTTAAGTTTGAACTAGAGACA
GTGAAGACTAAGTACCGAGAACTCCAAAACGATATGGATAACTTACAGAGACAGTTTGAT
AAGATTGCAAAACCAAAACAAGCCTCAGCATGGACTGCAGGGTGGAAAAAGTTAAGCAAG
CTCACAAAAACGACGAATATAGAATCACATGACTTCAACGGTCAGGTCCCAAATGCTGAA
CAGACCACAAAGACACCTAGAAGGTGGAGAAATTCCATTTCTTGA

Peptide Sequence

PEP ID

XP_016450030.1
PEP Infomation

PREDICTED: root phototropism protein 3-like isoform X1 [Nicotiana tabacum]
Sequence

MWESETESVSGRDFGNGVLSASEHGVKTDSFEQKGQSWYVATDIPSDLLVQIEDVSFHLH
KYPLLSRSGKMNRMIYESRGAELSKISLDELPGGPEAFELAAKFCYGIAIDLSATNISGL
RCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSILVLKSCEKLSPWAENLQIVRRC
SESIAWKACANPKGIKWQYTGKPTKVSSPNWNQMKDSSPSRNQQVVPPDWWFEDVSILRI
DHFVRVITAIKVKGMKHELIGAAIMQYAAKWLPGLIKEGSGLADDGSNISNGINGTSSGS
WRGGLHMIVAGIGDEVPSVQAKDQRMIVESLISIIPQHKDSVSCSFLLRLLRMANMLKVA
PALITELEKRVGMQFEQATLADLLIPSYNKSETMYDIDLVQRLLEHFIVQEQTESSSPSS
YPFSDKHMHDGIQRGTHLNAKMRVARLVDSYLTEVSRDRNLSLTKFQVLAEALPDSARTC
DDGLYRAIDSYLKAHPTLSEHERKRLCRVMDCQKLSVDACMHAAQNERLPLRVVVQVLFS
EQVKISNAMANLSLKDAGESHYQPLVSNRKSLLEATPQSFQEGWTAAKKDINTLKFELET
VKTKYRELQNDMDNLQRQFDKIAKPKQASAWTAGWKKLSKLTKTTNIESHDFNGQVPNAE
QTTKTPRRWRNSIS

Transcript Sequence

Gene sequence data has not been registered.